Course organized by IBSAL (Salamanca Biomedical Research Institute) as part of the iBRAINS-INCyL Unit of Excellence.
In-Person Course: “Introduction to Macro Development with FIJI/ImageJ”
Objective:
The main objective of the course is to provide training in developing macros in FIJI/ImageJ to automate image analysis and maximize data extraction.
Specific objectives:
- Understand the fundamental concepts and uses of macros in FIJI/ImageJ.
- Learn how to record and create macros to automate repetitive tasks in image analysis.
- Master the elements of the FIJI macro language (variables, operators, conditionals, functions).
- Use macros to develop semi-automated workflows for analyzing microscopy images.
Date:
July 14–17, 2025
Location:
Castile and León Institute of Neurosciences (INCyL)
Program:
| Course Date | Schedule | CONTENT | INSTRUCTOR |
| July 14 | 4:00 p.m. to 7:00 p.m. | Basics and First Steps
Introduction to Macros in FIJI/ImageJ What Is a Macro and What Is It Used For? Designing a macro: What do I want to do? How will I do it? Recording Macros: Practical Examples |
Pablo González Téllez de Meneses
(pre-doctoral researcher). Jorge Valero Gómez-Lobo. (Full Professor) |
| July 15 | 4:00 p.m. to 7:00 p.m. | Macro Programming Language (Part 1)
Variables: Numeric, Strings, Arrays Mathematical and Boolean Operators String Operations Practical Exercises and Problem Solving |
Pablo González Téllez de Meneses
(pre-doctoral researcher). Jorge Valero Gómez-Lobo. (Full Professor) |
| July 16 | 4:00 p.m. to 7:00 p.m. | Macro Programming Language (Part 2)
Control Structures: Conditionals (if/else) Loops: for, while, do…while Functions: Definition, Use of Parameters, and Return Values Best Practices for Developing Reusable Macros |
Pablo González Téllez de Meneses
(pre-doctoral researcher). Jorge Valero Gómez-Lobo. (Full Professor) |
| July 17 | 4:00 p.m. to 7:00 p.m. | Practical Applications and Semi-Automated Workflows
Developing Macros for Semi-Automated Protocols Creating and Analyzing ROIs Real-World Cases: Analysis of Microscopy Data Validation and Monitoring of Automatically Generated Data |
Pablo González Téllez de Meneses
(pre-doctoral researcher). Jorge Valero Gómez-Lobo. (Full Professor) |
Enrollment:
REGISTRATION:
The registration deadline is Monday, July 10, 2025, or until all spots are filled, whichever comes first. You can register individually through our website.
In order to successfully complete the course and receive the relevant certificate, it is necessary to complete 80% of the total program.
Price:
20 euros.
Method of selection:
Enrollment in the course will be carried out in strict order of enrollment (in courses with high demand, preference will be given to IBSAL personnel), according to the agreement of the IBSAL Training Commission.
Additional information:
Students must bring their own computer with an internet connection. Registered students will be sent instructions on how to connect to the Eduroam network. You must have the FIJI/ImageJ software installed and be familiar with how to use it.